Subgroups of Jemaah Islamiya
| Affiliate/Subgroup | Scope | Center of Gravity | |
 Al-Ghuraba | Local | Pakistan | |
| Mantiqi I | Regional | Malaysia | |
| Mantiqi II | National | Indonesia |  Active |
 Rajah Sulaiman Movement | Local | Philippines | Active |
| Kumpulan Mujahedin Malaysia | Local |
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